Results for "Genome Sequence"
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...a-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or...of tetra-nucleotides in bacterial genomes contain useful, albeit weak,...utilizes the information of whole genome, it is evident that it cannot...netic characterization when whole genome or 16S rRNA gene information is...2616 days ago
CLA: Contig-Layout-Authenticator
...ed with the construction of draft genomes with Illumina paired-end seq...ds, resulting in better assembled genomes. Moreover, CLA also hints at...extensively on various bacterial genome datasets for the ordering and...ols using both simulated and real sequence datasets. CLA is a user frien...2615 days ago
- ...an example of how to use free and open-source genome assembly and secondary scaffo...ate high quality assemblies of bacterial sequence data. The bacterial sample...ithub.com/jennomics/WorkflowPaper/blob/master/Genome%20Assembly%20and%20Annotation.m...
2615 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...re to generate high quality draft genomes. It is based on a series of...ach for closing gaps in assembled genomes using mate pair information....open by the assembler in a draft genome, even when using the same dat...t enables errors in the consensus sequence to be corrected by iterativel...2608 days ago
CABOG: Celera Assembler with Best Overlap Graph
...a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as...tion of the first draft human genome sequence. The software was released...letters per read that modern sequencers provide. What these program...2605 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is design...notate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level p...oped an automatic prokaryotic genome annotation pipeline that comb...https://www.ncbi.nlm.nih.gov/genome/annotation_prok/...2604 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...produce a map of an early mammalian genome that accounts for 96.8% of the available human genome sequence data. The precision is furt...few mammalian genomes are currently sequenced to high precision, our theor...art of a project to reconstruct the genome sequence of the last ancestor o...2602 days ago
ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 (July 10, 2012, documentation updated...2602 days ago
- Progressive Cactus is a whole-genome alignment package. Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules https://github.com/glennhickey/progressiveCactus
2602 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome d...2601 days ago
