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Latest announcement on DBT India. Calls Events Projects Jobs2770 days ago
- ...ead assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a...determine the best k-mer size, minimum abundance of correct k-mers, and genome size estimation for your da...
2767 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is...net/) -(optional but suggested) the jemalloc memory allocator (http://www.canonware.com/jemalloc/download.ht...
2767 days ago
- ...ubcommands will take either a single file or a pair of files as input. If no input file is specified, fqto...FASTQ data, either a single file or a pair of files will be generated. If no -o argument is prov...
2767 days ago
Standardized velvet assembly report
...(from R prompt type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST (to generate alignments against a reference genome). If using BLAT, add faToTw...2766 days ago
- ...nsert size of a paired-end library through the use of Bowtie, the primary parameters of velvet, and the process involved in producing a de novo assembly from Illumina...
2766 days ago
- ...TX is a tool for detecting inter-chromosome trans-location events. PRISM and PRISM_CTX were originally designed and written by Michael Brudno and Yue Jiang, The origi...
2764 days ago
- The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encompasses both...gle integrated solution in an easily accessible format. https://genomebiology.biomedcentral.com/ar...
2764 days ago
Understanding Greedy Algorithms
...blyClass/01.%20Assembly%20Intro.pdf http://lsl.sinica.edu.tw/Services/Class/files/20150612449.pdf http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_scs.pdf https://...2763 days ago
- caffMatch is a novel scaffolding tool based on Maximum-Weight Matchi...fasta file; -m) Command line argument with no options. It is used when .sam files are used instead of reads .fastq files. Do not use this option if you provi...
2762 days ago
