e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at an incredibly low cost compared to Sanger sequencing. Despite this, some old problems have become even more difficult, de novo assembly being on top of this list. Despite efforts to design tool...Tags: Bioinformatics, Analysis, NGS, e-RGA, Genome, Assemble
2758 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Minia, NGS, de Bruijn
2769 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, SGA, NGS
2769 days ago
Tags: Bioinformatics, Analysis, Assembly, NGS, Cutadapt
2763 days ago
Tags: Bioinformatics, Analysis, NGS, fqtools, FASTQ
2769 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTeX) ggplot2 (from R prompt type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST (to generate alignments against a reference genome). If using BLAT, ad...Tags: Bioinformatics, Analysis, Assembly, Genome, Velvet, standardized-velvet-assembly-report
2768 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Velvet, NGS, Tutorial
2768 days ago
Tags: Bioinformatics, Comparative genomics, Genomics, Structure Variation, SV, NGS
2767 days ago
Tags: Bioinformatics, Ancient, EAGER, Genome, DNA, Sequence, NGS
2766 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-science/data-science-tutorials/greedy-is-good/ This webpage is also useful for the same: http://learninglover.com/examples.php?id=59 http://www.cs.rpi.edu/~magdon/ps/conference/super_biokdd.pdf https://ocw.mit....Tags: Bioinformatics, Assembly, Greedy, Genome, NGS
2765 days ago