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... big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reli...bsp;alignment parameters for unusual kinds of sequence (e.g. nanopore)....2755 days ago
- ...based mode) synteny to the genome of some related species (re...pyScaf uses synteny to the genome of closely related species...y on simulated heterozygous genomes based on C. parapsilo...n affected by mis-assemblies (no de novo assembler /...
2755 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would have been enough to assemble large genomes from Sanger reads. In cont...
2755 days ago
- ...program that can simultaneously scan multiple genomes to identify homologous chr...ting the synteny correspondences in Plant Genome Duplication Database. It is...ify conserved gene arrays both within the same genome and across different genome...
2753 days ago
Finding Patterns in Biological Sequences
In this report we provide an overview of known techniques for discovery of patterns of biological sequences (DNA and proteins). We also provide biological motivation, and methods of...2753 days ago
- ...The MEME Suite allows the biologist to discover novel motifs in collections of u...clusters of motifs (MCAST), comparing motifs to known motifs (Tomtom), finding pr...ring the positional enrichment of sequences for known motifs (CentriMo), and anal...
2752 days ago
- ...system for constructing multiple genome alignments in the presence...rangement and inversion. Multiple genome alignments provide a basis for research into comparative genomics and the study of genome-w...le, a pair of Y. pestis genomes can be aligned in under a...
2033 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...vanilla C). It can analyze an entire microbial genome in 30 seconds or less. Acc...ferent: Prodigal performs well even in high GC genomes, with over a 90% perfect m...ences. It does not need to be supplied with any knowledge of the organism, as it...2746 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. More at http://gkno.me/
2727 days ago
- ...u) Progressive Cactus is a whole-genome alignment package. Require...achine when aligning mammal-sized genomes; less memory is needed for...sk space Instructions IMPORTANT NOTE: Progressive Cactus does no...a GitHub issue so we can help out: not only will you help yourself,...
2727 days ago
