Results for "PE"
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SeqMule: Automated human exome/genome variants detection
...BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the paramete...2676 days ago
- ...differential coverage binning of multiple metagenomes Mads Albertsen, Philip Hugenholtz, Adam Skarshewski, Gene W. Tyson, Kåre L. Nielsen and Per .H. Nielsen Nature Biotechn...
2669 days ago
- ...encing data Samtools and BCFtools both use HTSlib internally, but these source packages contain their own copies of htslib so they can be built independently.
2668 days ago
Pacbio Long Reads Compatible Software and Tools
...o PacBio's own SMRT® Analysis suite. All packages are believed to be open source or freely available f...tion. A separate page lists commercial software. Know of any other open source software for PacBio d...2668 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and als...2656 days ago
- SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pooled next-generation sequencing (NGS) single-nucleotide polymorphism (SNP) variant data. SNP...
2652 days ago
- ...on - December 1999. JSON is a text format that is completely language independent but uses conventions tha...ers of the C-family of languages, including C, C++, C#, Java, JavaScript, Perl, Python, and many others. T...
2648 days ago
- ...hich little previous sequence information is available, pose specific problems. This course addresses the specific strengths and weaknesses...formatics training, and lecturing/seminars of HTS approaches specifically targeting non-model...
2647 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
...ration sequencing with high error rate, and is especially intended for PacBio rea...utions. LoRDEC can correct errors of all these types. After correction, a larger...ta sets, included from eukaryotic or vertebrate species, on a usual computing ser...2642 days ago
WGS Celera Assembler version 8.3rc2
...pr 10 11:41 fragsInVars-rwxrwxr-x 1 urbe urbe 545K Apr 10 11:41 frgs2clones-rwxrwxr-x 1 urbe urbe 398K Apr 10 11:40 gatekeeper-rwxrwxr-x 1 urbe urbe 139K Apr 10 11:40 gatekeeperbench-rwxrwxr-x 1 urbe urbe 1...2642 days ago
