Results for "NT"
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GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party ope...al., 2004) packages. The pipeline was tested on Debian, Ubuntu, Fedora and BioLinux distributions. The method merges contigs or scaffolds from differen...2753 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...ose primary goal is to merge two or more assemblies in order to enhance contiguity and correctness of both. GAM-NGS does not rely on global alignment: regions of the two assemblie...2753 days ago
- PEAR is an ultrafast, memory-efficient and highly accurate pair-end read mer...overlaps and without requiring the target fragment size as input. In addition, i...results. Together with a highly optimized implementation, it can merge millions o...
2753 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...eGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenom...an accept any number of sequence (FASTA) files containing assembled contigs of an...h in Multi-FASTA format to produce an improved contig set based on OLC based asse...2753 days ago
- quickmerge uses a simple concept to improve contiguity of genome assemblies based...a short reads and PacBio long reads to improve contiguities of an assembly generated with PacBio long reads alone. This is counterintuitive because illumina s...
2753 days ago
- ...fts. Compare PSSMs to sequences Calculate the likelihood of chance similarities between random sequences. Do split and spliced alignment. Train alignment parameters for unusual kinds...
2753 days ago
- pyScaf orders contigs from genome assemblies uti...ong reads (NGS-based mode) synteny to the genome of some rela...nce-based mode, pyScaf uses synteny to the genome of closely r...not satisfying cut-offs (--identity and --overlap)...RATH on 16 CPUs. Important remarks: Reduce your assem...
2753 days ago
- ...random sequences in a statistical sense, 'overlap-consensus-layout' method would have been enough to assemble large genomes from Sanger reads. In contrast, real genomes often have...
2752 days ago
- ...program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. This is the toolset for generating the synteny correspondences in Pl...
2750 days ago
Finding Patterns in Biological Sequences
...d methods of biological verification of such patterns. Finally we list publicly available tools and databases for pattern discovery. On-line supplement is available through http://g...2750 days ago
