Results for "CA"
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FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both the sequence...2617 days ago
- ...sis (TNA) utilizes the information of whole genome, it is evident that it cannot replace other alignment-b...thods such as OrthoANI or 16S rRNA phylogeny. However, TNA can be useful for phylogene...
2616 days ago
- SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs us...ffering the possibility to manually control the scaffolding process. By using the...ientation of your contigs and combine them into scaffolds. Currently we offer thi...
2615 days ago
CLA: Contig-Layout-Authenticator
...uencing, we developed Contig-Layout-Authenticator (CLA). The CLA pipeline can scaffold reference-sorted co...erial genome datasets for the ordering and scaffolding of large repetitive c...ttps://sourceforge.net/projects/c-l-authenticator/files/2615 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality assemblies of bacterial seque...
2615 days ago
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S),...re included and will be auto-detected. Multithreading is supported and one can expect roughly linear speed-...2608 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contiguate...oved version, especially correction Pacfic Bioscience assemblies (PacBio) can be found here. RATT, a...2608 days ago
CABOG: Celera Assembler with Best Overlap Graph
...ftware for DNA research. CABOG has been a critical component of many genome seq...ge genomes such as mammalian. CABOG is an extension of the Cel...ists around the world. CABOG is one of many software pr...arine microbes, 2006). Today, CABOG is one of the leading asse...2605 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. Using Igenbio's proprietary algori...2604 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...ic Annotation Pipeline (PGAAP; see Pubmed Article) developed in 2005 has been replaced with an upgraded version that is capable of processing a larger data volume. You can find a more detailed descrip...2604 days ago
