CLA: Contig-Layout-Authenticator
...the construction of draft genomes with Illumina paired-end sequencing, we develo...e can scaffold reference-sorted contigs based on paired reads, resulting in bette...tive contigs. The tool has been validated and compared favorably with other widel...2618 days ago
2618 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high q...oach for closing gaps in assembled genomes using mate pair information. It is able to...assembly. An improved version, especially correction Pacfic Bioscience assemblies (Pa...2611 days ago
CABOG: Celera Assembler with Best Overlap Graph
...ganism (Drosophila melanogaster, 2000). It was the first to assemble both parental haplotypes of one human...CABOG is one of the leading assembly programs for data sets that include paired end data from the Roche 4...2608 days ago
ERGO 2.0 Bioinformatics suites
...stems biology informatics toolkit centered on comparative genomics to capture, qu...lection of microbial metabolic and non-metabolic pathways, ERGO™ assigns fu...ously unknown or mischaracterized genes, cryptic pathways, and gene products.&nbs...2607 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...aryotic Genome Automatic Annotation Pipeline (PGAAP; see Pubmed Article) developed in 2005 has been replaced with an upgraded version that is capable of processing a larger dat...2607 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...pecies. We combine the results from this method with data from chromosome painting experiments to produce...highly accurate in the foreseeable future. Our methods were developed as part of a project to reconstruct...2605 days ago
ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, ve...2605 days ago
2605 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows...2604 days ago