GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "bake-off" as an attempt to produce a realistic assessment of genome assembly...2840 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. T...2817 days ago
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Nemo – A stochastic, individual-base, genetically explicit simulation platform
...bstantial gain in computing time and system memory when simulating very large grids. Input parameters'...fied in separate files. This is particularly convenient when specifying large matrices. Many adjustmen...2816 days ago
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BIMA V3: an aligner customized for mate pair library sequencing
...e mapping and alignment of mate pair read pairs to a reference genome is a challenging and time consuming process for most NGS alignment programs. Large insert sizes, introduction of...2742 days ago