CABOG: Celera Assembler with Best Overlap Graph
...any genome sequencing projects. CABOG operates on small genomes such as bacterial as well as large genomes...sp;repository on Source Forge is an internet resource for scientists a...ncers provide. What these programs do is often described as a scaled up ver...2606 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, quer...d the most comprehensive genomic database integrated with the largest collec..., ERGO™ assigns functions to genes, integrates genes into pathways, an...2605 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...tion Pipeline is designed to annotate bacterial and archaeal genomes (chr...ess that includes prediction of protein-coding genes, as well as ot..., control regions, direct and inverted repeats, insertion sequences...pipeline in NCBI Handbook chapter. NCBI's annotation pipeline...2605 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...g the ancestral order and orientation of those intervals from their observed adja...ersions as small as 31 bp. Analysis of the predicted evolutionary breakpoints in...igh precision, our theoretical analyses and computer simulations indicate that ou...2603 days ago
ANGES: reconstructing ANcestral GEnomeS maps
...reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 (July 10, 2012, documentation updated in August 2014) Examples wi...2603 days ago
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GAM-NGS: genomic assemblies merger for next generation sequencing
...It can be used on all NGS-based assembly projects and it shows its full potential with multi-library Illum...an 20 available assemblers it is hard to select the best tool. In this context we propose a tool that impr...2602 days ago
Pollux: platform independent error correction of single and mixed genomes
...Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied...dition to correcting substitution errors, we locate and correct insertion, deleti...20 to 70 times more rare than successfully corrected errors. Furthermore, we show...2602 days ago
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