Results for "R"
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ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query...e sequenced genomes. Using Igenbio's proprietary algorithms, and the...bial metabolic and non-metabolic pathways, ERGO™ assigns functions to...2605 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genom...that includes prediction of protein-coding genes, as well as...equences, transposons and other mobile elements. NCBI has de...data volume. You can find a more detailed description of the...2605 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those intervals from their observed adjacencies...s from this method with data from chromosome painting experim...come highly accurate in the foreseeable future. Our methods w...2603 days ago
ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download...012, documentation updated in August 2014) Examples with results (featured ancestors: bo...2603 days ago
- Progressive Cactus is a whole-genome alignment package. Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules https://github.com/glennhickey/progressiveCactus
2603 days ago
- A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat) This tool is a standalone version of Ragout module [http://fenderglass.github./Ragout]
2603 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its full p...select the best tool. In this context we propose a tool that improves ass...2602 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing...nd can be applied to single- or mixed-genome data. In additio...ies improves when reads are corrected by our software. https...2602 days ago
- The process of finishing a genome and moving it from a draft stage (the result of...nd pitfalls in the finishing process. While genomes can now b...triction MappingOptical Maps are global, ordered maps of rest...of these tasks can be found here: Finishing Scripts v1.0...
2601 days ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This...ies and scaffolding/gap-filling. If you encounter any issues, please contact me...it Lam. https://github.com/kakitone/MetaFinisherSC https://github.com/kakiton...
2599 days ago
