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ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empiri...2794 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper...
2793 days ago
- ...h kmer value of 31). 5. Finaly, re-assembling the whole dataset with the merged contigs or the combined contigs, using a given kmer size. https://github.com/aalokaily/Hierarchical-Ge...
2768 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2767 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs...
2759 days ago
- ...ng a compressed representation of DNA sequence reads. More at https://github.com/jts/sga SGA dependencies...://code.google.com/p/google-sparsehash/) -the bamtools library (https://github.com/pezmaster31/bamtools) -zl...
2759 days ago
- ...and is available under the terms of the MIT license. If you use cutadapt, please cite DOI:10.14806/ej.17.1.200 . More at https://github.com/marcelm/cutadapt...
2753 days ago
Standardized velvet assembly report
...z | fastaAllSize > mysequences.stat Substitute fastqAllSize for fastq files. ./permute.sh mysequences (leave out the .fa) https://github.com/leipzig/standardized-velv...2758 days ago
- pyScaf orders contigs from genome assemblies utilising several types of information: paired-end (PE) and/or mate-pair libraries (NGS-based mode) long reads (NGS-bas...
2748 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...Prodigal source code is freely available under the General Public License. Download the latest version of Prodigal at the Prodigal github page. or Browse the...2738 days ago
