Results for "gene expression regulation"
Bookmarks
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons betwe...graphs and annotations can be displayed. Using a user-defined set of genes as input, BRIG can display gene prese...2802 days ago
- Development of cancer is driven by somatic alterations, including numerical...sociated chromosomal breaks and identify genes that appear non-randomly aff...across (large) series of tumor samples. ‘GeneBreak’...ed annotation approach for breakpoint-to-gene mappi...
2182 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool...r the analysis of miRNA (or more generall short RNA) expression using short-read deep s...dapted for the analysis of reads generated with the Illumina sequencing p...ent mappers, create differential gene (miRNA) expression...
2798 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression...2783 days ago
- Visualization has played an extremely important role in the current genomic...tion to inspect and understand variants, expression patterns, evolutionary...ary Note 1). For example, here we show a gene fusion in the SK-BR-3 breast cancer cell line linking the genes CYTH...
2782 days ago
- HybPiper was designed for targeted sequence capture, in which DNA seq...uencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of P...MiSeq), and assigns them to target genes usin...end sequence reads). When HybPiper generates...
2768 days ago
- Comparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primacy is reinforced by t...at can represent and compare unlimited numbers of genomes in a broad phylogenetic vi...
2725 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify hom...omal regions and subsequently align these regions using genes as anchors. This is the toolset for generating...
2720 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a m...bial (bacterial and archaeal) gene finding program developed at...Prodigal is an extremely fast gene recognition tool (written in...y locates the 3' end of every gene in th...is freely available under the General Pu...2713 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-seq...1154 days ago
