Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...ith or without sequencing errors, or with low or high community diversity. Grinder may also be used to help decide between alternative sequencing methods for a sequence-based project,...2580 days ago
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PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...t, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of a...2389 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...or nucleotide) and results in an optimal alignment faster than conventional dymanic programming techniques. It is also better than the heuristic methods with respect to alignment qua...2382 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
...p;Supporting Online Materials, specifically in the section labelled “Pipeline description”. In addition, the pipeline uses tools and methods from Juicer (Durand &...2362 days ago
JPred4: A Protein Secondary Structure Prediction Server
JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction.2361 days ago
LRCstats: Long Read Correction Statistics
...which can cause issues in downstream analysis. Long read correction algorithms reduce the error rate of long reads either through self-correcting methods or using accurate, short read...2354 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
...positional biases using variable order motif distributions and captures more reliably the local composition of a sequence compared to fixed-order methods. Optionally the predictions c...2351 days ago