QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to 150 bp) reads at a low cost. Even with low (advertised 1%) error rate, 100 &t...2397 days ago
2391 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...b. Miniasm still needs improvements. Miniasm confirms that at least for high-coverage bacterial genomes, i...or correctors and consensus tools, miniasm may also be useful to produce high-quality assemblies. Minimap...2378 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
...ssifications from a Naive Bayes classifier, RITA is able to achieve very high accuracy on short reads. Unli...es where both types of classifier are in agreement, which constitute the highest-confidence set. Sequences...2378 days ago
Opera: An optimal genome scaffolding program
...Biology, May 2016, doi: 10.1186/s13059-016-0951-y.Song Gao, Wing-Kin Sung, Niranjan Nagarajan. Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequenc...2378 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...ges were incapable of assembling the long read lengths (5-50kbp) at such high error rate (between ~5 and 40...ds using complementary MiSeq data and produce a de novo assembly that is highly contiguous and accurate: th...2376 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...sequence comparison tool providing the following benefits: PLAST is a high-performance sequence comparis...), Reduces the processing time of sequences comparisons while providing highest quality results, Contains...2375 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
...nment tool for DNA sequences. ACANA is specifically designed for aligning sequences that share only some moderately conserved regions and/or have a high frequency of long insertions...2369 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...er/read-based assembler that capitalizes on the high accuracy of Illumina sequence...with the assembly process. Meraculous achieves high performance with large datase...under a day. The process pipeline implements a highly transparent and portable mo...2355 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...rrangements between pairs of DNA sequences. The detection is based on relative compression, namely using a FCM, also known as Markov model, of high context order (typically 20)....2354 days ago