Results for "Mate pair sequencing"
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Development of cancer is driven by somatic alterations, including numerical and str...by array-Comparative Genomic Hybridization (CGH) or by (low-pass) whole genome sequencing (WGS). First, ‘GeneBreak’ col...2205 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and p...nerall short RNA) expression using short-read deep sequencing data. In its present implemen...the analysis of reads generated with the Illumina sequencing platform. MIRO allows to prep...
2821 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharac...ty present in a sample. The newest sequencing technologies...metagenomics easier, by making the sequencing process faster, and more diff...ing sequences as short as 100 base pairs (bp) have until now been relativel...
2816 days ago
- Visualization has played an extremely imp...the transcriptome previously, genome sequencing did not identify a dire...between these two genes. After SMRT sequencing, Ribbon shows that there are...M and BAM files with long, short, or paired-end reads, Ribbon can also load c...
2805 days ago
- Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for...
2805 days ago
- ...ate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real...rized from large recalibrated sequencing data. ART can also simu...rts simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina's Solexa,...
2792 days ago
- ...nces from high-throughput DNA sequencing reads. Targeted bait capture...e starts with high-throughput sequencing reads (for example from Illum...ative paralogs, and calculate sequencing depth. For more information,&...ly for each sample (single or paired-end sequence reads). When HybPipe...
2791 days ago
- Background. Next-generation sequencing technologies are now producing multiple times the genome size in tota...ence sequence. In this way, it can very quickly, and at no additional sequencing cost, generate new, modified...
2769 days ago
- EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data to identify CNVs....ication of CNVs in small as well as large-scale re-sequencing population and cancer studies...
2765 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2765 days ago
