Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suite. All...bsp;commercial software. Know of any other open source software for PacBio dat...2663 days ago
2643 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
...nd is especially intended for PacBio reads. It uses a hybrid strategy, me...ors of all these types. After correction, a larger portion of the sequence of PacBio reads is usable for detecti...(DBG) representing the short reads, and seeks a corrective sequence f...2637 days ago
Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical ste...y IDBA-UD Assembly Ray Assembly Gene Prediction Assembly Evaluation Read Mappi...2629 days ago
2612 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...iCORN, that enables errors in the consensus sequence to be corrected by iteratively mapping reads to the current assembly. An improved version, especially correction Pacfic Bioscience assemblies (PacBio) can be found here. RATT, a...2605 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA r...ation of all sequencing machines, namely, that they read out very few DNA letters at a...ns of letters long from the hundreds of letters per read that...2602 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 s...cted errors. Furthermore, we show that the quality of assemblies improves when reads are...2598 days ago
2597 days ago
2595 days ago