Results for "Paired end sequencing"
Bookmarks
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly progr...sembly). It uses information from paired-end/mate-pair/long reads...h the information provided by the paired-end/mate-pair/long reads (for fur...long-reads from third-generation sequencing technologies (PacBio or Oxfor...2823 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short...r workflow.As a typical de novo assembler, fermi tends to produce contigs with slig...rmi provides a tool to fix misassemblies by using paired-end reads&...
2823 days ago
- ...rge volume of next-generation sequencing (NGS) data. NGS techno...ramatic shift in the world of sequencing. Merely five years back, geno...tes used to be very expensive endeavor. To get a genome of interest se...rnment agencies. The tasks of sequencing and assembly were handled by...
2827 days ago
- The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational datab...evel technical details about the overall architecture and external dependencies...
2825 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. W...ent of genome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE hav...2825 days ago
- Development of cancer is driven by somatic alterations, including numerical and st...by array-Comparative Genomic Hybridization (CGH) or by (low-pass) whole genome sequencing (WGS). First, ‘GeneBreak’ col...
2182 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and...nerall short RNA) expression using short-read deep sequencing data. In its present implemen...the analysis of reads generated with the Illumina sequencing platform. MIRO allows to prep...
2798 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharact...ical diversity present in a sample. The newest sequencing technologies have simultaneously made metagenomics easier, by making the sequencing process faster, and more diff...
2792 days ago
- ...ound in the transcriptome previously, genome sequencing did not identify a direct...l fusion between these two genes. After SMRT sequencing, Ribbon shows that the...on to SAM and BAM files with long, short, or paired-end reads, Ribbon can also load coordina...
2781 days ago
- Background: Transcriptomics, metabolomics, m...cs, and other various next-generation sequencing (-omics) fields are kn...ing data into graphics. For example, rendering interactive heatmaps fro...ose shinyheatmap: an advanced user-friendly heatmap software suite capable of...
2781 days ago
