Results for "RNA sequencing"
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Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is...Mark-ET is a gene prediction tool that incorporates RNA-Seq data into unsupervised tr...uires supervised training and uses information from RNA-Seq re...1978 days ago
- Redundans pipeline assists an assembly of heteroz...sembled contigs, paired-end and/or mate pairs sequencing libraries and returns&nb...-to-medium size genomes flexible toward many sequencing technologies (Illumina, 454 o...
2830 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparis...quence alignments and co-variation information.R4RNA is the R package powerin...customized figures and scripting. http://www.e-rna.org/r-...
2830 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://e...OPERA-long-read that enables scaffolding with long-reads from third-generation sequencing technologies (PacBio or Oxfor...2822 days ago
- These tutorials are written for hundreds...with large volume of next-generation sequencing (NGS) data. NGS technologies...ght a dramatic shift in the world of sequencing. Merely five years back, geno...us government agencies. The tasks of sequencing and assembly were handled by...
2826 days ago
GAGE : Genome Assembly Gold-standard Evaluation
...enome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE have now been published in the journal Genome Research: GAGE: A criti...2824 days ago
- Development of cancer is driven by somatic alterations, including numerical and st...by array-Comparative Genomic Hybridization (CGH) or by (low-pass) whole genome sequencing (WGS). First, ‘GeneBreak’ col...
2181 days ago
- ...ul tool for the analysis of miRNA (or more generall short RNA) expression using short-read deep sequencing data. In its present i...s generated with the Illumina sequencing platform. MIRO allows to prep..., create differential gene (miRNA) expression profiles and cluster rea...
2797 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharact...ical diversity present in a sample. The newest sequencing technologies have simultaneously made metagenomics easier, by making the sequencing process faster, and more diff...
2791 days ago
- Visualization has played an extremely important role i...been found in the transcriptome previously, genome sequencing did not identify a direct chr...mosomal fusion between these two genes. After SMRT sequencing, Ribbon shows that there are...
2780 days ago
