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...assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file...2851 days ago
- ...deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consu...
2871 days ago
- ...ity, detailed circular maps of organellar genomes like the plastid genome (plastome) or the mitochondrial genome (chondriome). Nevertheless, you can upload any GenBank entry. The wo...
2871 days ago
- We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".
2869 days ago
- ...eMark-ET is a gene prediction tool that incorporates RNA-Seq data into unsupervised training and subsequen...initio gene predictions. AUGUSTUS is a gene finder that usually requires supervised training and uses info...
2003 days ago
- ...joining of genome fragments using paired-end and/or mate-pairs reads gap closing Redundans is: fast & lightweight, multi-core support and memory-optimised, so...
2855 days ago
- Before uploading a data file, check the samples gallery to make sure that your...ppear in that order. Need help? Post questions to the Circos Google Group. http://mkweb.bcgsc.ca/table...
2854 days ago
- ...and: Baltimore. Sybil has been used at TIGR/JCVI, IGS, NYU, New York Medical College, Novartis Vaccines and University of Maryland: College Park to support a number of research proj...
2849 days ago
OPERA : Optimal Paired-End Read Assembler
...features that are important for scaffolding large genomes (multi-library support, better repeat-handling e...n addition to other scalability and usability improvements (bam and gzip support, smaller memory footprint...2847 days ago
BLAST Ring Image Generator (BRIG)
...s/brig If you have any questions or comments, post them on one of the trackers on BRIG’s SourceForge page: http://sourceforge.net/tracker/?group_id=328245. Features: Imag...2826 days ago
