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BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecti...g genomic structural variants and chromosomal abnormalities. Un...ntamination, chimeras, etc.), and presence of structural variant br...ams when processing mate pair sequencing. Availability: http://bioinfo...2726 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: w...of data at an incredibly low cost compared to Sanger sequencing. Despite this,...ly related reference. The idea is to combine de novo and reference-guided assembly in order t...2721 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and M...erent assemblers using the same or different sequencing technologies. When scaffolds...2721 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal is to merge two or...more assemblies in order to enhance contiguity and c...ocks) are identified through reads' alignments and stored in a weightedgraph. The...2721 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge...quirements: You will need to have the following tools installed and in $PATH, or added to $binpath in th...2721 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequencing technologies. The latest...2617 days ago