Results for "dRAD and ddRAD sequencing"

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  • RECORD

    Background. Next-generation sequencing technologies are now pro...ome studied in the experiment and the reference genome of the s...is information is disregarded and t...oftware to experimental reads and so-called pseudoreads and uses the...quickly, and at no additional sequencing cost, generate new, modified...

    2745 days ago

  • EXCAVATOR2tool

    EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data to identify...targeted exons from WES data and enlarges the spectrum of detectable...all as well as large-scale re-sequencing population and cancer studies...

    2740 days ago

  • SWALO

    SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.

    2740 days ago

  • Cutadapt

    Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. Cutadapt helps...tolerant way. It can also modify and f...aracters. Also, paired-end reads and even colorspace data is supported. I...

    2726 days ago

  • BIMA V3: an aligner customized for mate pair library sequencing

    Summary: Mate pair library sequencing is an effective and economical method for detecti...g genomic structural variants and chromosomal abnormalities. Un...ntamination, chimeras, etc.), and presence of structural variant br...ams when processing mate pair sequencing. Availability: http://bioinfo...

    2726 days ago

  • e-RGA: enhanced Reference Guided Assembly of Complex Genomes

    Next Generation Sequencing has totally changed genomics: w...of data at an incredibly low cost compared to Sanger sequencing. Despite this,...ly related reference. The idea is to combine de novo and reference-guided assembly in order t...

    2721 days ago

  • GARM:Genome Assembly, Reconciliation and Merging

    The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and M...erent assemblers using the same or different sequencing technologies. When scaffolds...

    2721 days ago

  • GAM-NGS: genomic assemblies merger for next generation sequencing

    GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal is to merge two or...more assemblies in order to enhance contiguity and c...ocks) are identified through reads' alignments and stored in a weightedgraph. The...

    2721 days ago

  • MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs

    MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge...quirements: You will need to have the following tools installed and in $PATH, or added to $binpath in th...

    2721 days ago

  • TMAP - torrent mapping alignment program General Notes

    TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequencing technologies. The latest...

    2617 days ago