Results for "multiple fasta"
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SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pooled ne...h variants called relative to a single reference sequence (one sequence in one FASTA file). Just run the main scri...2637 days ago
WGS Celera Assembler version 8.3rc2
These are release notes for Celera Assembler v...urbe urbe 224K Apr 10 11:41 asmOutputFasta-rwxrwxr-x 1 urbe urbe 448K Ap...1 urbe urbe 9,8K Apr 10 11:41 convert-fasta-to-v2.pl-rwxrwxr-x 1 urbe urb...urbe urbe 854 Apr 10 11:41 utg2fasta-rwxrwxr-x 1 urbe urbe 731K Ap...2626 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo th...2617 days ago
- FASTQ format is a text-based format for storing both a biological sequen...ly developed at the Wellcome Trust Sanger Institute to bundle a FASTA sequence and its quality...
2603 days ago
- SSPACE standard is a stand-alone program for scaffolding pre-assembled con...Perl. The input data is given by pre-assembled contig sequences (FASTA) and NGS paired-read data (Illumina/454/Solid FASTA or FASTQ). The final scaffold...
2601 days ago
- Progressive Cactus is a whole-genome alignment package. Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules https://github.com/glennhickey/progressiveCactus
2588 days ago
- A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat) This tool is a standalone version of Ragout module [http://fenderglass.github./Ragout]
2588 days ago
- The process of finishing a genome and moving it from a draft stage (the result of sequencing and...veral improvements to programs in v1.0 as well as new scripts for working with multi...
2586 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce g...2582 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct synteny blocks among multi...2582 days ago
