Results for "short reads mapping"
Bookmarks
Visualization has played an extremely important role in the current ge...ctural variations captured by long reads or assembled contigs often ne...ows patterns in alignments of many reads across multiple chromosomes,...on to SAM and BAM files with long, short, or paired-end reads,...2805 days ago
- Summary: GenomeScope is an open-source web tool to rapidly estimate the overall characteristics of a...cluding genome size, heterozygosity rate, and repeat content from unprocessed short reads....
2397 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process...equencing data. ART can also simulate reads using user own read error mod...cient in read simulation. ART outputs reads i...
2792 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequenc...s from high-throughput DNA sequencing reads. Targeted bait capture is a...tarts with high-throughput sequencing reads (for example from Illumina Mi...sample (single or paired-end sequence reads)....
2791 days ago
- LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Oxford Nanopore Technologies Ltd. It can...gh-quality draft genome assemblies with any long sequences (eg. ONT reads,...
2791 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq is a project hosted by&...y. Simulate diploid reference and read sequences, map reads, call variants and evaluate the...2773 days ago
- Background. Next-generation sequencing technologies are now producing multiple times the genome size in total reads from a single experiment. Thi....g., mutants of the same species) directly from the reads u...
2770 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will apply: 1. Partitioning a given reads d...
2766 days ago
- EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) dat...ping targeted exons by integrating the analysis of In-targets and Off- targets reads....
2765 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyse..., then bipype finds the SA coordinates of the input reads and generates alignments in the SAM format given single-end reads,...
2764 days ago
