Results for "Mate pair sequencing"
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...of unwanted sequence from your high-throughput sequencing reads. Cutadapt helps...s can contain IUPAC wildcard characters. Also, paired-end reads and even colorspa...Cutadapt comes with an extensive suite of automated tests and is available under the t...2726 days ago
- fqtools is a software suite for fast processing of FASTQ files. Various...ual subcommands will take either a single file or a pair of files as input. If no inpu...that generate FASTQ data, either a single file or a pair of fi...
2732 days ago
- caffMatch is a novel scaffolding tool based on Maximum-Weight Matching able to produce...file(s) corresponding to the first read of the read pair; -2) (Comma separated...ile(s) corresponding to the second read of the read pair; &nb...
2727 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economic...y, the mapping and alignment of mate pair read pairs to a reference gen...tifacts (biotin junction reads, paired-end read contamination, chi...gnment programs when processing mate pair sequencing. Availability: http://bioinfo...2726 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at an incredibly low cost compared to Sanger sequencing. Despite this, some old probl...2722 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-p...ges contigs or scaffolds from different assemblers using the same or different sequencing technologies. When scaffolds...2722 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal is to merge two or more assemblies in order to enhance contiguity and correctness of both. GAM-NGS does not re...2722 days ago
- PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and...bytes of memory. PEAR evaluates all possible paired-end read overlaps and witho...ized implementation, it can merge millions of paired end...
2721 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge...2721 days ago
- pyScaf orders contigs from genome assemblies utilising several types of information: paired-end (PE) and/or mate-pair libraries (NGS-based mode) long reads (NGS-based mode)...losely related species in order to order contigs and estimate dista...
2721 days ago
