Results for "RNA sequencing"
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Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for...2780 days ago
- ART is a set of simulation tools to...nerate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real seque...mmarized from large recalibrated sequencing data. ART can also simulate r...major commercial next-generation sequencing platforms: Illumina's Solexa,...
2767 days ago
- ...equence capture, in which DNA sequencing libraries are enriched for ge...nces from high-throughput DNA sequencing reads. Targeted bait capture...e starts with high-throughput sequencing reads (for example from Illum...ative paralogs, and calculate sequencing depth. For more information,&...
2766 days ago
- Background. Next-generation sequencing technologies are now producing multiple times the genome size in tota...ence sequence. In this way, it can very quickly, and at no additional sequencing cost, generate new, modified...
2745 days ago
- EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data to identify CNVs....ication of CNVs in small as well as large-scale re-sequencing population and cancer studies...
2740 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2740 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. Cutadapt helps with t...
2726 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic structura...ccurate than popular NGS alignment programs when processing mate pair sequencing. Availability: http://bioinfo...2726 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at an incredibly low cost compared to Sanger sequencing. Despite this, some old probl...2721 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-...ges contigs or scaffolds from different assemblers using the same or different sequencing technologies. When scaffolds...2721 days ago
