Results for "short reads mapping"
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Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop comp...ase) For the impatient A typical Minia command line looks like: ./minia -in reads.f...2757 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memor...icient, which is achieved by using a compressed representation of DNA sequence reads....
2757 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of...anted sequence from your high-throughput sequencing reads. Cutadapt helps with these t...n error-tolerant way. It can also modify and filter reads i...
2751 days ago
- The objective of this activity is to help you understand how to run Velvet in general, how to accurately...d the process involved in producing a de novo assembly from Illumina reads....
2756 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom...
2755 days ago
- caffMatch is a novel scaffolding tool base...igh-quality scaffolds from NGS data (reads and contigs). The tool is wri...igner in case one needs to first map reads to contigs (instead of provid...These are .sam files produced after mapping reads to contigs and the resulting sc...
2752 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is...l abnormalities. Unfortunately, the mapping and alignment of mate pair...protocol artifacts (biotin junction reads, paired-end read contaminatio...ructural variant breakpoints within reads increases mapping and alignment complexity. We...2751 days ago
E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source co...2750 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge a...e to assemble, de novo, an organism sequenced with short reads, the results are still far from those achievable with long reads....2746 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal is to merge two or more ass...g the same genomic locus (called blocks) are identified through reads'...2746 days ago
