OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pai...2838 days ago
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Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PAT...type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST...he kmer, cvCut, expCov, and other flags To Run: perl fastaAllSize mysequences.fa &...2747 days ago
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BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic structural variants and chromosomal abnormalities. Unfortunately, the...2742 days ago