Results for "Bioinformatics and Computational Biology"
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GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from...sults produced can be used by biocurators and researchers who need accurate...ith protein-coding gene predictions. Bioinformatics, doi: 10.1093/bioinfo...2851 days ago
- Collections of few handy tools for bioinformatician http://molbiol-tools.ca/Convert.htm
2848 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome co...frame of functional proteins and developed a test for gene ide...f previously annotated genes) and refining the gene structure o...rom the current literature on computational motif discovery. Based on the...enomics to further our understanding...2776 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembl...mate-pair/long reads to order and orient the intermediate conti...ors, improve efficiency etc.) and incorporated features that ar...ore encourage you to download and use our l...s is available at Genome Biology. We look forward to getting y...2837 days ago
- The Sybil software package provides a primarily web-based front-en...atabase. It was developed by the bioinformatics department at The...tute for Genomic Research (TIGR) and development continues at the...J. Craig Venter Institute (JCVI) and the Insti...s about the overall architecture and ext...
2839 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is us...ity genome maps for use in publications and websites, or as a visualizati...ct with the genome using a powerful pan-and-zoom inte...is to provide greater user interaction, and mor...2827 days ago
- Development of cancer is driven by somatic alterations, including numerical and structural chromosomal aberrations. Currently, several computational methods are available and are widely applied to detect...associated chromosomal breaks and identify genes that appear non-randomly...
2196 days ago
- ...posed technical challenges in biology, both in terms of available computational resources as well a...s (e.g., 100k+ rows) has been computationally infeasible on both desktop computers and web browsers. In addition to memory req...methods are implemented in R, and are available as part of the shin...
2795 days ago
- HybPiper was designed for targeted sequence capture, in which DN...te of Python scripts that wrap and connect bioinformatics tools in order to...example from Illumina MiSeq), and assigns them to target genes...sample for each target region, and a separat...directory per run of HybPiper, and som...
2781 days ago
- Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It prov...sp;an all-purpose alignment tool for less diverged sequences; and SLAP, a context-sensiti...
2757 days ago
