2634 days ago
2609 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construct...ng and scaffolding of large repetitive contigs. The tool has been validated and compar...bly with other widely-used scaffolding and ordering tools using both simulated and rea...2609 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based...rection Pacfic Bioscience assemblies (PacBio) can be found here. RATT, a tool to transfer the annotation fr...2601 days ago
2596 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity...ith more than 20 available assemblers it is hard to select the best tool. In this context we propose a tool that improves assemblies (and...2595 days ago
2592 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly...ing (NGS) platforms quickly, easily and effectively. SIMBA also is open source tool, i.e., can be freely download...2591 days ago
AVID: A Global Alignment Program
...f the method, ranging from the comparison of assemblies to alignment of...also performed a quantitative comparison of AVID with other popular alignment tools. To this end, we have established...useful for future studies. The tools we have developed for the alignment comparisons, as well as the AVID p...2590 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for c...that Synteny Portal will serve as a highly valuable tool that will enable biologists t...ics studies by compensating limitations of existing tools. Synteny Portal is freely av...2590 days ago