Laj: viewing and manipulating the output from pairwise alignment programs
Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can disp...h Java". Currently it exists in two forms, a stand-alone application and a web-based a...2678 days ago
2673 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT...re categories: De novo assembly Structural Variations Detection Reference-based a...2664 days ago
2644 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate...g server, and even works on desktop/laptop computers. It adopts a novel graph based a...2638 days ago
2634 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin d...the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based o...2629 days ago
2615 days ago
2614 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequen...ut-Authenticator (CLA). The CLA pipeline can scaffold reference-sorted contigs based o...2613 days ago