ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin...datasets such as ChIP-seq data of various histone modifications to discover de novo the...2625 days ago
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A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...that is able to contiguate contigs from a de novo assembly against a closely related ref...by iteratively mapping reads to the current assembly. An improved version, especia...ome, or an earlier assembly, onto the latest assembly. PAGIT bundles these softwar...2601 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DN...equencing machines (Marine microbes, 2006). Today, CABOG is one of the leading assembly programs for data sets that i...2599 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its ful...2595 days ago
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GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using diverse information sources. GRASS offers a mixed...2591 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes...2591 days ago