Results for "454 data"
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KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcri...fy each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its me...2871 days ago
- RepeatModeler is a de-novo repeat family identification...nt boundaries and family relationships from sequence data. RepeatModeler assists in aut...ng the runs of RECON and RepeatScout given a genomic database and uses the output to bu...
2869 days ago
- Most variant calling pipelines result in files containin...vcf) is an increasingly popular format for this data. The format of these files an...heir content is discussed in the vignette ‘vcf data.’ These files are typic...
2868 days ago
Sushi: An R/Bioconductor package for visualizing genomic data
Sushi: An R/Bioconductor package for visualizing genomic data2856 days ago
- Gene finding in eukaryotic genomes is notoriously difficult to automate. The task i...nge of species. GeneMark-ET is a gene prediction tool that incorporates RNA-Seq data into unsupervised training an...
2002 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input assembled contigs...dium size genomes flexible toward many sequencing technologies (Illumina, 454...
2855 days ago
- Before uploading a data file, check the samples gallery to make sure that your data format is compatible. Your file must be plain text. Your data values must be non-negat...
2854 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina sh...layout-consensus paradigm and uses the FM-DNA-index (FMD-index) as the key data structure. It is inspired by...
2847 days ago
- These tutorials are written for hundreds of bioinformaticians trying to cope with large volume of next-generation sequencing (NGS) data. NGS technologies brought a d...
2851 days ago
- VALET is a pipeline for performing de novo validation of metagenomic...quality of different assemblies. For comparing multiple assemblies of the same data-sets, VALET also reports an o...
2834 days ago
