Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSB...EBRs (shared by pigs and cattle) were detected using the pig and human genomes...2774 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms ena...r of duplicated genes in the yeast genome. The remaining ambiguities in.... We used this test to revisit the genome of S. cerevisiae, reducing th...onal motif discovery. Based on the genome-...2774 days ago
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OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (...iate contigs/scaffolds assembled in a genome assembly project, in a proces...t are important for scaffolding large genomes (multi-library support, bett...s and algorithms is available at Genome...2835 days ago
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GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "ba...an attempt to produce a realistic assessment of genome assembly software in a rapidl...of GAGE have now been published in the journal Genome...2837 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications.... Users can interact with the genome using a powerful pan-and-zoom...e-write of CGView, a circular genome viewer written by Paul Stotha...2825 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The applicatio...and read coverage can be displayed for draft genomes...2814 days ago