Results for "IG"
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methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also targe...2952 days ago
- ...Computational Biology special issue : Quality assessment and control of high-throughput sequencing data)....nnotation for the preliminary assembly, which can be visualised, such as Figure 2a from the paper showing...
2942 days ago
- ...AEMR standardizes input by converting a variety of read types to Binary Alignment Map (BAM) format, allowi...f standard reports. GAEMR’s analysis philosophy is centered on contiguity, correctness, and complet...
2941 days ago
- ...sualization of assembled DNA sequence data ("contigs") derived from (often uninte...and taxonomic annotation for collections of contigs with a view to separating ou...ikely to be of use on its own as it requires contig data to be supplied in a form...
2941 days ago
CovCal: Coverage / Read Count Calculator
...d Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration and genome size, then...2225 days ago
- ...// URLs are not supportedsource("https://bioconductor.org/biocLite.R")biocLite("clusterProfiler") https://www.bioconductor.org/packages/devel/bioc/vignettes/clusterProfiler/inst/do...
2938 days ago
- ...control test for potential horizontal transfer candidates identified by alternative methods, especially those based on nucleic acid signatures. Candidates having high LPI scores are unlikely to h...
2933 days ago
- ...ection algorithms rely on a strong phylogenetic signal distinguishing the transfe...or strains is challenging, as the phylogenetic signal is usually weak and the nu...tability (CRM). Using CRM, the algorithm assigns a confidence score based on...
2933 days ago
- ...lysis. This primer provides an introduction to SAMtools, and is geared towards those new to next-generation sequence analysis. The primer is also designed to be self-contained and h...
2932 days ago
- ...ies. To decode a given SAM flag value, just enter the number in the field below. The encoded properties will be listed under Summary below, to the right.
2925 days ago
