LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split...ds (over thousands of base-pairs). LAMSA takes takes the advantage of...designed two-step strategy. That is, LAMSA initially splits the read int...co-linear variants. We benchmarked LAMSA with simulated and real datas...2213 days ago
Long reads mapper bash script !
...3/bin/bwa ngmlrLoc=/home/urbe/Tools/ngmlr/bin/ngmlr-0.2.3/ngmlr lamsaLoc=/home/urbe/Tools/LAMSA/lamsa #Parameters accepted...a $longReads -t $thread > $fileName.out.sam elif [ $toolName == "lamsa" ]; then echo "Mapping wi...2154 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
➜ LAMSA git:(master) ./lamsa aln Usage: lamsa aln [options] <ref.fa> <read.fa/fq> Algorithm options: -t --thread [INT] Number of threads. [1] -l --seed-len [INT] Length of s...2154 days ago