Next generation sequencing in R or bioconductor environment
...tension for genomics data (online manual) Gviz: Plotting data and annotation information along genomic coordinates HilbertVis: Hilbert genome plots GenomeGraphs: Plotting genom...3667 days ago
Apps for Busy Bioinformatics Researchers !!!
...amine the status of genes in common cell lines. A subset of COSMIC containing cell lines can be queried for mutations. Copy Number Variation (CNV) plots from cell lines profiled by G...3584 days ago
Genome Assembly Tools and Software - PART1 !!
...al of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads. r2cat – Synteny Plots & Comparative Assembly...2728 days ago
Run miniasm assembler on nanopore reads !
...> AONTself.paf awk '$5=="-"' AONTself.paf | awk '{print $1}'| sort|uniq > invertedrepeat.list Generated a few palindrome and repeats plots (highlighting only repeats la...2373 days ago
List of visualization tools for network biology
...s. Gene Ontology and PSI-MI formats supported http://cbi.labri.fr/eng/proviz.htm SpectralNET Network analysis and visualizations. Scatter plots and dimensionality reduction...2331 days ago
Some useful Bioinformatics links
...ng oneliners https://gist.github.com/davfre/8596159 Inroduction to dot-plots http://www.code10.info/index...hp%3Foption%3Dcom_content%26view%3Darticle%26id%3D64:inroduction-to-dot-plots%26catid%3D52:cat_coding_algor...2284 days ago