Next generation sequencing in R or bioconductor environment
...hort read alignment data in BAM format (via Rsamtools) and associating them with genomic feature ranges, such as exons or genes. This way one can quantify the number of reads aligning...3675 days ago
List of visualization tools for network biology
...sed to mathematically analyze a circuit (a “network” of interconnected components). The Network analysis provides the ability to quantify associations between individu...2338 days ago
List of non-commercial NGS genotype-calling software
...ics and genomics studies, relies crucially on the accurate calling of SNPs and genotypes. Recently developed statistical methods both improve and quantify the considerable uncertainty...2146 days ago