Results for "NGS data analysis"

Wire posts

  • Some beautiful script for analysis in #R http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/ecological.html

    2922 days ago

  • #NGS basics http://deeptools.readthedocs.io/en/latest/content/help_glossary.html #Tutorial #Help

    2897 days ago

  • Extract reference nucleotide from BAM file: samtools view your.bam | awk '{print substr( $10, 100, 1)}' #SAM #BAM #Samtools #Tricks #NGS

    2894 days ago

  • #Hierarchical cluster analysis http://www.econ.upf.edu/~michael/stanford/maeb7.pdf

    2881 days ago

  • Plot the coverage in R http://cnr.lwlss.net/SeqCoverage/ #BAM #SAM #R #NGS #Plot

    2876 days ago

  • Leading edge analysis reports #Tags to indicate the percentage of #genes contributing to the #enrichment score, http://www.r-bloggers.com/leading-edge-analysis/ #R

    2873 days ago

  • #Duplication #FastQC http://proteo.me.uk/2013/09/a-new-way-to-look-at-duplication-in-fastqc-v0-11/ #Sequencing #NGS

    2872 days ago

  • Remove tab with comma in file: perl -lpe 's/\t/,/g' < flattened_line_0.fa.data > output.csv #PerlTrick #PerlO,liner #Perl #Tab #Comma

    2860 days ago

  • Reads QC http://evomicsorg.wpengine.netdna-cdn.com/wp-content/uploads/2015/01/introQC.pdf #Quality #Reads #NGS

    2854 days ago

  • NGS exercise http://wiki.bits.vib.be/index.php/NGS_Exercise.5 #NGS #VIB #Training #Exercise

    2844 days ago