PureCN: copy number calling and SNV classification using targeted short read sequencing
...loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clona...C, Chiang D, Morrissey M (2016). “PureCN: Copy number calling and SNV classification using targeted...2242 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...not needed Output: LoFreq Description: SNV caller, Python language, stan...l Output: VCF MarginAlign Description: SNV caller, specifically tailored...nnotation Dependent Depletion; tool for scoring SNV deletions/insertions; “...3055 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...nbsp;k-mers profiles of the RNA-seq paired-end reads Software (Java) https://github.com/ChimeRScope/ChimeRScope/wiki FastGT Genotyping of known SNV/SNP variants directly from ra...2517 days ago