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...example, rendering interactive heatmaps from large input datasets (e.g., 100k+ rows) has been computatio...Khomtchouk/shinyheatmap. More at http://biorxiv.org/content/early/2016/09/21/0764632765 days ago
- ...are essential for studying genome evolution, and help to choose parameters for downstream analysis. We demonstrate its accuracy on 324 simulated and 16 real datasets with a wide ra...
2357 days ago
- ...segment detection. Beagle version 4.1 has a more accurate genotype...type imputation algorithm. Version 4.1 also has several changes to t...sp;version 4.0. If you use Beagle 4.1 in a published analysis, plea...reference samples. Am J Hum Genet 98:116-126.doi:10.1016/j.ajhg.2015...
2758 days ago
- This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK...
2758 days ago
- The eFORGE tool provides a method to view the tissue specific regulatory component of a set of EWAS DMPs. eFORGE analysis takes a set of DMPs, such as those hits abo...
2758 days ago
- ...s, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for the simulation study of the 1000 Genomes Project . ART is i...
2752 days ago
- ...ies with any long sequences (eg. ONT reads, PacBio reads, another draft genomes, etc) Paper at https://gigascience.biomedcentral.com/articles/10.1186/s13742-015-0076-3
2751 days ago
Comparative genomics educational material and papers bookmarks
...g porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary b...e to the number of bovine-lineage-specific EBRs (100) reported earlier using a s...stor ~60 Myr ago2. This rate compares to ~1.9 rearrangements per million...2745 days ago
Method in Comparative genomics !!
...ation with high sensitivity and specificity. We used this test to revisit the genome of S. cerevisiae, reducing the overall gene count by 500 genes (10% of previously annotated gen...2745 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq is a project hosted by Sou...2733 days ago
