Kraken: ultrafast metagenomic sequence classification using exact alignments
...chers to use faster abundance estimation programs, which only classify small subsets of metagenomic data. Using exact alignment of k-mers, Kraken achieves classification accuracy compa...2868 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...accuracy of Illumina sequence by eschewing an explicit error correction step which we argue to be redundant with the assembly process. Meraculous achieves high performance with large d...2326 days ago
Genome Assembly Tools and Software - PART2 !!
...hree leading assemblers: Velvet, ABySS and SOAPdenovo. Moreover, PASHA achieves the fastest speed for all thr...ctrum of expression values and in presence of alternative isoforms. It achieves this by using an array of has...2684 days ago
Genome Assembly Tools and Software - PART1 !!
...are package for comparative assembly of metagenomic reads. MetaCompass achieves comparable assembly performan...and aligns the assembled contigs to the query reference protein. GRASP achieves much higher sensitivity than...2684 days ago