Results for "Amos"
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...the output of MUMmer), physical mapping data, or information about gene synteny. Home Page: http://sourceforge.net/apps/mediawiki/amos/index.php?title=Bambus2...2831 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packag...2706 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...ill need to have the following tools installed and in $PATH, or added to $binpath in the tool: Newbler (specifically runAssembly)Minimus2 (part of AMOS, also requires MUMmer)2706 days ago
- ...taMate-pair information can be valuable in augmenting short-read assemblies and reconstructing the genome as larger scaffolds. AMOS-Hybrid is a pipeline written in the AMOS framework (open-source assemb...
2554 days ago
Hawkeye: an interactive visual analytics tool for genome assemblies
...d are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourceforge.net/hawkeye. htt...1963 days ago
Genome assembly forensics: finding the elusive mis-assembly
...s their implementation in our automated validation pipeline, called amosvalidate. We demonstrate the a...ith common assembly formats and is released, open-source, at http://amos.sourceforge.net. https://www...1938 days ago
