Results for "Assembled"
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This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap-filling. If you encounter any issues, please contact me at kklam@eecs.berkeley.edu. My name is Ka-Kit Lam. https://github.com/kakitone/MetaFinisherSC ht...Tags: BIGMAC, Breaking, Inaccurate, Genomes, Merging, Assembled, Contigs, Long, Read, Metagenomic, Assembly
2532 days ago
- CroCo is a program to detect cross contamination events in assembled transcriptomes using sequencing reads to determine the true origin of every transcripts.Such cross contaminations can be expected if several RNA-Seq experiments were prepared during the same period at the same lab, or by the sam...
Tags: CroCo, program, detect, potential, cross, contaminations, HTS, assembled, transcriptomes, expression, quantification
1937 days ago
- Chromonomer is a program designed to integrate a genome assembly with a genetic map. Chromonomer tries very hard to identify and remove markers that are out of order in the genetic map, when considered against their local assembly order; and to identify scaffolds that have been incorrectly assemb...
Tags: Chromonomer, tool, repairing, enhancing, assembled, genomes, integration, genetic, maps, conserved, synteny
1531 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of ...Tags: CAT/BAT, tool, taxonomic, classification, contigs, metagenome, assembled, genomes, MAGs
1440 days ago
