Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guid...e you through the typical steps of metagenome assembly and binning. The Tutorial Data Set FastQC Quality Control Assembly Velvet Assembly MEGAHIT A...2567 days ago
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A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...is able to contiguate contigs from a de novo assembly against a closely related ref...d by iteratively mapping reads to the current assembly. An improved version, especia...nome, or an earlier assembly, onto the latest assembly. PAGIT bundles these softwar...2543 days ago
CABOG: Celera Assembler with Best Overlap Graph
...t-generation Sanger sequencing machines and second-generation pyrosequencing machines (Marine microbes, 2006). Today, CABOG is one of the leading assembly programs for data sets that i...2540 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its full potential...2536 days ago
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GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using diverse information sources. GRASS offers a mixed...2532 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacter...2532 days ago