Comment on "Run miniasm assembler on nanopore reads !"
I followed this to assemble the genome using ONT (nanopore reads) Minimap and miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed for long, noisy reads, they do no...2191 days ago
Comment on "List of genome announcement, notes and reporting journals"
Genomics data also accept draft genome assembly papers https://www.sciencedirect.com/journal/genomics-data2198 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...es the format automatically from file extension. fastq - Loads FASTQ or FASTA files. fasta - Loads FASTQ or FASTA files. gfa - Graphical Fragment Assembly format. sam - Sequence Alignm...2308 days ago
2360 days ago
2589 days ago
Comment on "Genome Assembly Tutorial"
This totorial is also very informative http://www.imperial.ac.uk/bioinformatics-data-science-group/resources/software/next-generation-sequencing-ngs-software/de-novo-assembly/2709 days ago
Comment on "Structural variation: the hidden genomic treasure"
...high-speed next-gen sequencing structural variation caller. GRIDSS calls variants based on alignment-guided positional de Bruijn graph break-end assembly, split read, and read pair ev...2719 days ago
Comment on "SGA: String Graph Assembler"
Try this hierarchical genome assembly (HGA) assembler https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4779561/2721 days ago
Comment on "RACA: Reference-Assisted Chromosome Assembly"
...romosomer does not require mate-pair libraries and it offers a number of auxiliary tools that implement common operations accompanying the genome assembly process. More at http:/...2787 days ago
2815 days ago