HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...curacy across diverse sequencing technologies, including but not limited to: NGS short reads (Illumina HiSeq) clone-based sequencing (Fosmid or BAC clones) SMRT reads (PacBio)...2181 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...ior transition/emission probability distribution for each long read and uses this to correct errors in these reads. Using datasets from two DNA-seq BAC clones (CH17-157L1 and CH17-2...2084 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
...with reasonable results: super-scaffold N50 values in the range of dozens of Mb and pseudomolecules with better gene space representation than a BAC-by-BAC assembly. It has never been t...1719 days ago
CLARK: Fast, accurate and versatile sequence classification system
...classification problems (see the article for details), namely (1) the taxonomic classification of metagenomic reads to known bacterial genomes, and (2) the assignment of BAC clones and transcript to chro...1540 days ago