gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and also to annotate...2593 days ago
WGS Celera Assembler version 8.3rc2
These are release notes for Celera Assembler version 8.3rc2, wh...ch was released on May 24, 2015.This distribution package provides a stable, tested, do...tributions ready for installation.The source code package includes full source code (re...2578 days ago
2574 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations...transfer, which are either given as input or computed with the ecceTERA package, to which DeCoSTAR is integra...2574 days ago
2540 days ago
2492 days ago
CoreTracker, a codon reassignment tracker
CoreTracker detects evidences of codon reassignment from the protein repertoire of a set o...et, and retain only the most promising one. Detailled information about the package, installation and tutorials a...2498 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most o...nce assembly is available. QuorUM is distributed as an independent software package and as a module of the MaSuRC...2366 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a...nION data. Results: Here we present poRe, a package for R that enables users to m...d visualize MinION nanopore sequencing data. As a package for R, poRe has been tested o...2351 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer. It includes a functions to generate a nu...2351 days ago