BBTools for bioinformatician !
...u'd want to only keep the paired output. BBSplit is based on BBMap, so it is a...BDuk and Seal (which can be used similarly to BBSplit) are always deterministic.&nb...----------------------------------------------BBSplit.shBBSplit now has the ability...2273 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads t...e ambiguous between human and mouse. BBSplit tracks this additional ambigu...mbig2” flag. The normal use of BBSplit is like Seal, either quantify...li and salmonella, you could do this:bbsplit.sh in=reads.fq ref=ecoli.fa,s...2317 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exact repeat somewhere, reads mapping to it will be mapped ambiguously. But if you want to determi...Tags: BBSplit, Read, Binning, Tool, Metagenomes, Contaminated, Libraries
2317 days ago