Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typica...computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in...2617 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the...2616 days ago
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ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can...cilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chro...2573 days ago
Enrichr: a comprehensive gene set enrichment analysis
...184 annotated gene sets from 102 gene set libraries. New features have been added to Enrichr including the ability to submit fuzzy sets, upload BED files, improved application program...2565 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes...ered scaffolds. Script https://sourceforge.net/projects/c-l-authenticator/files/2557 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contiguat...2550 days ago
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