Structural variation: the hidden genomic treasure
...short read data Link MANTA https://github.com/Illumina/manta SV-Bay https://github.com/InstitutCurie/SV-Bay BreakDancer http://breakdancer.sourceforge.net/ Variation H...2711 days ago
1446 days ago
Why BreakDancer does not displays the amount of reads supporting SV?
Using breakdancer the output consists of DEL, INV, INS, CTX and ITX. Using following commands: bam2cfg.pl -g -h dis.bam normal.bam > config_file.cfgbreakdancer_max -d test config_file.cfg > dis_normal.ctx the 11th output column should displays the amount of reads supporting the called SV ...Tags: Bioinformatics, SV, BreakDancer, Reads, Depth
2711 days ago